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Extracting Complex Biological Events with Rich Graph-Based Feature Sets
Jari Björne
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Juho Heimonen
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Filip Ginter
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Antti Airola
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Tapio Pahikkala
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Tapio Salakoski
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Paper Details:
Month: June
Year: 2009
Location: Boulder, Colorado
Venue:
BioNLP |
WS |
SIG: SIGBIOMED
Citations
URL
Evaluating Dependency Representations for Event Extraction
Makoto Miwa
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Sampo Pyysalo
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Tadayoshi Hara
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Jun’ichi Tsujii
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Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks
Ekaterina Buyko
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Udo Hahn
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Fast and Robust Joint Models for Biomedical Event Extraction
Sebastian Riedel
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Andrew McCallum
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Relieving the Computational Bottleneck: Joint Inference for Event Extraction with High-Dimensional Features
Deepak Venugopal
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Chen Chen
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Vibhav Gogate
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Vincent Ng
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Fast Recursive Multi-class Classification of Pairs of Text Entities for Biomedical Event Extraction
Xiao Liu
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Antoine Bordes
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Yves Grandvalet
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Distant Supervision for Relation Extraction beyond the Sentence Boundary
Chris Quirk
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Hoifung Poon
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Joint Inference for Knowledge Extraction from Biomedical Literature
Hoifung Poon
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Lucy Vanderwende
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Grounded Semantic Parsing for Complex Knowledge Extraction
Ankur P. Parikh
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Hoifung Poon
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Kristina Toutanova
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Joint Extraction of Events and Entities within a Document Context
Bishan Yang
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Tom M. Mitchell
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Event Extraction as Dependency Parsing
David McClosky
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Mihai Surdeanu
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Christopher Manning
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Swanson linking revisited: Accelerating literature-based discovery across domains using a conceptual influence graph
Gus Hahn-Powell
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Marco A. Valenzuela-Escárcega
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Mihai Surdeanu
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Two Strong Baselines for the BioNLP 2009 Event Extraction Task
Andreas Vlachos
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Event Extraction for Post-Translational Modifications
Tomoko Ohta
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Sampo Pyysalo
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Makoto Miwa
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Jin-Dong Kim
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Jun’ichi Tsujii
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Scaling up Biomedical Event Extraction to the Entire PubMed
Jari Björne
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Filip Ginter
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Sampo Pyysalo
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Jun’ichi Tsujii
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Tapio Salakoski
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A Comparative Study of Syntactic Parsers for Event Extraction
Makoto Miwa
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Sampo Pyysalo
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Tadayoshi Hara
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Jun’ichi Tsujii
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An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text
Martin Gerner
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Goran Nenadic
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Casey M. Bergman
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Towards Event Extraction from Full Texts on Infectious Diseases
Sampo Pyysalo
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Tomoko Ohta
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Han-Cheol Cho
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Dan Sullivan
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Chunhong Mao
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Bruno Sobral
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Jun’ichi Tsujii
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Sophia Ananiadou
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Semantic Parsing for Biomedical Event Extraction
Deyu Zhou
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Yulan He
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EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions
Sofie Van Landeghem
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Filip Ginter
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Yves Van de Peer
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Tapio Salakoski
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Towards Exhaustive Event Extraction for Protein Modifications
Sampo Pyysalo
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Tomoko Ohta
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Makoto Miwa
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Jun’ichi Tsujii
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Search-based Structured Prediction applied to Biomedical Event Extraction
Andreas Vlachos
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Mark Craven
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Overview of Genia Event Task in BioNLP Shared Task 2011
Jin-Dong Kim
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Yue Wang
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Toshihisa Takagi
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Akinori Yonezawa
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Event Extraction as Dependency Parsing for BioNLP 2011
David McClosky
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Mihai Surdeanu
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Christopher Manning
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Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation
Sebastian Riedel
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Andrew McCallum
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BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming
Julien Jourde
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Alain-Pierre Manine
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Philippe Veber
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Karën Fort
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Robert Bossy
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Erick Alphonse
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Philippe Bessières
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Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
Sampo Pyysalo
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Tomoko Ohta
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Jun’ichi Tsujii
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A Pattern Approach for Biomedical Event Annotation
Quang Le Minh
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Son Nguyen Truong
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Quoc Ho Bao
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Double Layered Learning for Biological Event Extraction from Text
Ehsan Emadzadeh
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Azadeh Nikfarjam
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Graciela Gonzalez
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MSR-NLP Entry in BioNLP Shared Task 2011
Chris Quirk
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Pallavi Choudhury
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Michael Gamon
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Lucy Vanderwende
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Generalizing Biomedical Event Extraction
Jari Björne
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Tapio Salakoski
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Stanford’s Multi-Pass Sieve Coreference Resolution System at the CoNLL-2011 Shared Task
Heeyoung Lee
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Yves Peirsman
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Angel Chang
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Nathanael Chambers
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Mihai Surdeanu
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Dan Jurafsky
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PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
Jari Björne
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Sofie Van Landeghem
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Sampo Pyysalo
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Tomoko Ohta
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Filip Ginter
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Yves Van de Peer
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Sophia Ananiadou
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Tapio Salakoski
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A three-way perspective on scientific discourse annotation for knowledge extraction
Maria Liakata
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Paul Thompson
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Anita de Waard
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Raheel Nawaz
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Henk Pander Maat
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Sophia Ananiadou
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Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures
Sofie Van Landeghem
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Suwisa Kaewphan
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Filip Ginter
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Yves Van de Peer
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Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities
Xiao Liu
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Antoine Bordes
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Yves Grandvalet
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Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information
Lishuang Li
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Yiwen Wang
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Degen Huang
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A Hybrid approach for biomedical event extraction
Xuan Quang Pham
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Minh Quang Le
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Bao Quoc Ho
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Identification of Genia Events using Multiple Classifiers
Roland Roller
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Mark Stevenson
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Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts
Mai-Vu Tran
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Nigel Collier
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Hoang-Quynh Le
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Van-Thuy Phi
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Thanh-Binh Pham
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CoMAGD: Annotation of Gene-Depression Relations
Rize Jin
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Jinseon You
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Jin-Woo Chung
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Hee-Jin Lee
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Maria Wolters
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Jong Park
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SnapToGrid: From Statistical to Interpretable Models for Biomedical Information Extraction
Marco A. Valenzuela-Escárcega
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Gus Hahn-Powell
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Dane Bell
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Mihai Surdeanu
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External Evaluation of Event Extraction Classifiers for Automatic Pathway Curation: An extended study of the mTOR pathway
Wojciech Kusa
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Michael Spranger
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Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing
Jari Björne
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Tapio Salakoski
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http://www-tsujii.is.s.u-tokyo.ac.jp/
http://svmlight.joachims.org/svm_
http://nlp.stanford.edu/software/
Field Of Study
Task
Corpus Annotation
Named Entity Recognition
Information Extraction
Relation Extraction
Coreference Resolution
Biomedical
Language
English
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