End-to-End Negation Resolution as Graph Parsing ACL-2020 IWPT-2020 WS-2020

Amalgamation of protein sequence, structure and textual information for improving protein-protein interaction identification ACL-2020

Closing the Gap: Joint De-Identification and Concept Extraction in the Clinical Domain ACL-2020

Predicting the Focus of Negation: Model and Error Analysis ACL-2020

Interactive Extractive Search over Biomedical Corpora ACL-2020 BioNLP-2020 WS-2020

DeSpin: a prototype system for detecting spin in biomedical publications ACL-2020 BioNLP-2020 WS-2020

Simultaneous paraphrasing and translation by fine-tuning Transformer models ACL-2020 NGT-2020 WS-2020

REflex: Flexible Framework for Relation Extraction in Multiple Domains ACL-2019 WS-2019

Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture EMNLP-2019 WS-2019

RACAI’s System at PharmaCoNER 2019 EMNLP-2019 WS-2019

Robust Representation Learning of Biomedical Names ACL-2019

Annotation of Rhetorical Moves in Biochemistry Articles ACL-2019 WS-2019

Detecting Causal Language Use in Science Findings EMNLP-2019

Automatic Generation of High Quality CCGbanks for Parser Domain Adaptation ACL-2019

Transfer Learning for Causal Sentence Detection ACL-2019 WS-2019

A Benchmark Corpus of English Misspellings and a Minimally-supervised Model for Spelling Correction ACL-2019 WS-2019

Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation Task EMNLP-2019 WS-2019

DUT-BIM at MEDIQA 2019: Utilizing Transformer Network and Medical Domain-Specific Contextualized Representations for Question Answering ACL-2019 WS-2019

From News to Medical: Cross-domain Discourse Segmentation NAACL-2019 WS-2019

Recognizing UMLS Semantic Types with Deep Learning EMNLP-2019 WS-2019

Crowdsourced Hedge Term Disambiguation ACL-2019 WS-2019

Query selection methods for automated corpora construction with a use case in food-drug interactions ACL-2019 WS-2019

Neural Token Representations and Negation and Speculation Scope Detection in Biomedical and General Domain Text EMNLP-2019 WS-2019

Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network ACL-2019

ScispaCy: Fast and Robust Models for Biomedical Natural Language Processing ACL-2019 WS-2019

Trigger Word Detection and Thematic Role Identification via BERT and Multitask Learning EMNLP-2019 WS-2019

Using Snomed to recognize and index chemical and drug mentions. EMNLP-2019 WS-2019

Publicly Available Clinical BERT Embeddings NAACL-2019 WS-2019

Deep neural model with enhanced embeddings for pharmaceutical and chemical entities recognition in Spanish clinical text EMNLP-2019 WS-2019

A Unified Multi-task Adversarial Learning Framework for Pharmacovigilance Mining ACL-2019

Probing Biomedical Embeddings from Language Models NAACL-2019 WS-2019

Enhancing biomedical word embeddings by retrofitting to verb clusters ACL-2019 WS-2019

PubMedQA: A Dataset for Biomedical Research Question Answering EMNLP-2019

BioRelEx 1.0: Biological Relation Extraction Benchmark ACL-2019 WS-2019

Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task EMNLP-2019 WS-2019

Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies ACL-2019 WMT-2019 WS-2019

Simplification-induced transformations: typology and some characteristics ACL-2019 WS-2019

Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical Literature EMNLP-2019 WS-2019

A Multi-Platform Annotation Ecosystem for Domain Adaptation ACL-2019 WS-2019

Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering ACL-2019 WS-2019

Measuring Innovation in Speech and Language Processing Publications. LREC-2018

An Annotated Corpus for Machine Reading of Instructions in Wet Lab Protocols NAACL-2018

Improving Feature Extraction for Pathology Reports with Precise Negation Scope Detection COLING-2018

Syntactic Patterns Improve Information Extraction for Medical Search NAACL-2018

Deep Affix Features Improve Neural Named Entity Recognizers *SEMEVAL-2018

Enhancing Drug-Drug Interaction Extraction from Texts by Molecular Structure Information ACL-2018

Simultaneously Self-Attending to All Mentions for Full-Abstract Biological Relation Extraction NAACL-2018

Unsupervised Identification of Study Descriptors in Toxicology Research: An Experimental Study EMNLP-2018 WS-2018

A Neural Autoencoder Approach for Document Ranking and Query Refinement in Pharmacogenomic Information Retrieval ACL-2018 WS-2018

A Corpus with Multi-Level Annotations of Patients, Interventions and Outcomes to Support Language Processing for Medical Literature ACL-2018

Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing ACL-2018 WS-2018

Using Hedge Detection to Improve Committed Belief Tagging NAACL-2018 SemBEaR-2018 WS-2018

Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts ACL-2018 WS-2018

AttentionMeSH: Simple, Effective and Interpretable Automatic MeSH Indexer EMNLP-2018 WS-2018

The UIR Uncertainty Corpus for Chinese: Annotating Chinese Microblog Corpus for Uncertainty Identification from Social Media LREC-2018

A Multi- versus a Single-classifier Approach for the Identification of Modality in the Portuguese Language LREC-2018

A Corpus of Drug Usage Guidelines Annotated with Type of Advice LREC-2018

Enhancing Drug-Drug Interaction Classification with Corpus-level Feature and Classifier Ensemble WS-2017

Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction BioNLP-2017 WS-2017

An open-source tool for negation detection: a maximum-margin approach SemBEaR-2017 WS-2017

Book Review: Biomedical Natural Language Processing by Kevin Bretonnel Cohen and Dina Demner-Fushman CL-2017

Scalable Bio-Molecular Event Extraction System towards Knowledge Acquisition WS-2017

Automating Biomedical Evidence Synthesis: RobotReviewer ACL-2017

Adapting the TTL Romanian POS Tagger to the Biomedical Domain RANLP-2017 WS-2017

Making Travel Smarter: Extracting Travel Information From Email Itineraries Using Named Entity Recognition RANLP-2017

Bootstrapping a Romanian Corpus for Medical Named Entity Recognition RANLP-2017

A Domain and Language Independent Named Entity Classification Approach Based on Profiles and Local Information RANLP-2017

POMELO: Medline corpus with manually annotated food-drug interactions RANLP-2017 WS-2017

Exploring Different Dimensions of Attention for Uncertainty Detection EACL-2017

Exploiting Domain Knowledge via Grouped Weight Sharing with Application to Text Categorization ACL-2017

Entity Extraction in Biomedical Corpora: An Approach to Evaluate Word Embedding Features with PSO based Feature Selection EACL-2017

MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for Keyphrase Classification in Scientific Publications *SEMEVAL-2017

Character based String Kernels for Bio-Entity Relation Detection BioNLP-2016 WS-2016

Syntactic analyses and named entity recognition for PubMed and PubMed Central — up-to-the-minute BioNLP-2016 WS-2016

Rationale-Augmented Convolutional Neural Networks for Text Classification EMNLP-2016

Leveraging coreference to identify arms in medical abstracts: An experimental study Louhi-2016 WS-2016

Neural Networks For Negation Scope Detection ACL-2016

Coordination Annotation Extension in the Penn Tree Bank ACL-2016

An Investigation of Recurrent Neural Architectures for Drug Name Recognition Louhi-2016 WS-2016

Unsupervised Resolution of Acronyms and Abbreviations in Nursing Notes Using Document-Level Context Models Louhi-2016 WS-2016

Findings of the 2016 Conference on Machine Translation WMT-2016 WS-2016

Syntactic methods for negation detection in radiology reports in Spanish BioNLP-2016 WS-2016

LABDA at the 2016 BioASQ challenge task 4a: Semantic Indexing by using ElasticSearch BioASQ-2016 WS-2016

Automatic Extraction of Implicit Interpretations from Modal Constructions EMNLP-2016

Appraising UMLS Coverage for Summarizing Medical Evidence COLING-2016

Active learning for detection of stance components WS-2016

Cancer Hallmark Text Classification Using Convolutional Neural Networks WS-2016

WikiCoref: An English Coreference-annotated Corpus of Wikipedia Articles LREC-2016

Sieve-based Coreference Resolution in the Biomedical Domain LREC-2016

Using Data Mining Techniques for Sentiment Shifter Identification LREC-2016

Semantic Relation Extraction with Semantic Patterns Experiment on Radiology Reports LREC-2016

TASTY: Interactive Entity Linking As-You-Type COLING-2016

Expanding a dictionary of marker words for uncertainty and negation using distributional semantics Louhi-2015 WS-2015

Held-out versus Gold Standard: Comparison of Evaluation Strategies for Distantly Supervised Relation Extraction from Medline abstracts Louhi-2015 WS-2015

Extracting Information about Medication Use from Veterinary Discussions NAACL-2015

Negation Scope Detection for Twitter Sentiment Analysis WASSA-2015 WS-2015

Detecting speculations, contrasts and conditionals in consumer reviews WASSA-2015 WS-2015

Towards Developing an Annotation Scheme for Depressive Disorder Symptoms: A Preliminary Study using Twitter Data CLPsych-2015 WS-2015

An Analysis of Biomedical Tokenization: Problems and Strategies Louhi-2015 WS-2015

A Compositional Interpretation of Biomedical Event Factuality EXprom-2015 WS-2015

WS

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ACL

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LREC

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EMNLP

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BioNLP

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*SEMEVAL

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CoNLL

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NAACL

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IJCNLP

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COLING

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Louhi

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RANLP

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NeSp-NLP

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IWCS

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EACL

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CL

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SemBEaR

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WMT

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WASSA

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ROCLING/IJCLCLP

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IWPT

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PACLIC

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BioASQ

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HLT

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DepLing

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PITR

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ALTA

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TACL

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NGT

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LASM

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CLPsych

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SIGDIAL

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EXprom

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SIGHAN

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